PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05283.50
Common NameJCGZ_17700, LOC105644550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 180aa    MW: 20249.7 Da    PI: 9.3647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05283.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-184090255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Jcr4S05283.50 40 SYRGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 90
                   69*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-183999No hitNo description
SMARTSM003802.7E-3740104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-304099IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2240100IPR016177DNA-binding domain
PROSITE profilePS5103222.7744098IPR001471AP2/ERF domain
PfamPF008475.3E-134090IPR001471AP2/ERF domain
PRINTSPR003672.9E-104152IPR001471AP2/ERF domain
PRINTSPR003672.9E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MILFNVQPET TNKESSESNS STGATKGEEV TSKEERKEKS YRGVRKRPWG KYAAEIRDST  60
RNGIRVWLGT FDSAEAAALA YDQAAFSMRG SMAILNFPVE VVRESLQDIK YRFEDGCSPV  120
IALKKKHSMR RKSTSKKSKK ETNEVNTSRK QNVVVLEDLG AEYLEELLSS SCEGSPNPNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-3037101266ATERF1
2gcc_A3e-3037101266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085329.11e-131PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC85e-70ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A067JRM41e-131A0A067JRM4_JATCU; Uncharacterized protein
STRINGSolyc09g066360.1.17e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-41ethylene response factor 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]